epiout.utils

Submodules

• epiout.utils.common
• epiout.utils.genomic_features
• epiout.utils.io
• epiout.utils.utils

Package Contents

Functions

peak_str(df: Union[pandas.DataFrame, pyranges.PyRanges])	Convert genomic intervals to peak string
df_batch_writer(df_iter, output)	Write a batch of dataframes to a csv file.
logit(x, eps=1e-07)
trim_mean(x, proportiontocut=0.125, axis=0)

epiout.utils.peak_str(df: Union[pandas.DataFrame, pyranges.PyRanges])

Convert genomic intervals to peak string

Parameters

df – genomic intervals as pyranges or dataframe

epiout.utils.df_batch_writer(df_iter, output)

Write a batch of dataframes to a csv file.

epiout.utils.logit(x, eps=1e-07)

epiout.utils.trim_mean(x, proportiontocut=0.125, axis=0)